Papers

My full list of papers is here (* represents co-first authors).

	Harmonization of Structural Brain Connectivity Through Distribution Matching Zhou, Zhen and Fischl, Bruce and Aganj, Iman. Human Brain Mapping (2025)
	Relationship between MRI brain-age heterogeneity, cognition, genetics and Alzheimer's disease neuropathology Antoniades, Mathilde and Srinivasan, Dhivya and Wen, Junhao and Erus, Guray and Abdulkadir, Ahmed and Mamourian, Elizabeth and Melhem, Randa and Hwang, Gyujoon and Cui, Yuhan and Govindarajan, Sindhuja Tirumalai and Chen, Andrew A and Zhou, Zhen and others. EBioMedicine (2024)
	pNet A toolbox for personalized functional networks modeling Ma, Yuncong and Li, Hongming and Zhou, Zhen and Chen, Xiaoyang and Ma, Liang and Guray, Erus and Balderston, Nicholas L and Oathes, Desmond J and Shinohara, Russell T and Wolf, Daniel H and others. bioRxiv (2024)
	The genetic architecture of multimodal human brain age Wen, Junhao and Zhao, Bingxin and Yang, Zhijian and Erus, Guray and Skampardoni, Ioanna and Mamourian, Elizabeth and Cui, Yuhan and Hwang, Gyujoon and Bao, Jingxuan and Boquet-Pujadas, Aleix and others. Nature communications (2024)
	Genetic and clinical correlates of two neuroanatomical AI dimensions in the Alzheimer's disease continuum Wen, Junhao and Yang, Zhijian and Nasrallah, Ilya M and Cui, Yuhan and Erus, Guray and Srinivasan, Dhivya and Abdulkadir, Ahmed and Mamourian, Elizabeth and Hwang, Gyujoon and Singh, Ashish and others. Translational psychiatry (2024)
	Deep clustering survival machines with interpretable expert distributions Hou, Bojian and Li, Hongming and Jiao, Zhicheng and Zhou, Zhen and Zheng, Hao and Fan, Yong. ISBI (2023)
	Genomic loci influence patterns of structural covariance in the human brain Wen, Junhao and Nasrallah, Ilya M and Abdulkadir, Ahmed and Satterthwaite, Theodore D and Yang, Zhijian and Erus, Guray and Robert-Fitzgerald, Timothy and Singh, Ashish and Sotiras, Aristeidis and Boquet-Pujadas, Aleix and others. Proceedings of the National Academy of Sciences (2023)
	Cross-scale functional connectivity patterns of the aging brain learned from the multi-cohort iSTAGing study Zhou, Zhen and Li, Hongming and Tran, Chau B and Ma, Yuncong and Srinivasan, Dhivya and Abdulkadir, Ahmed and Wen, Junhao and Erus, Guray and Mamourian, Elizabeth and Nasrallah, Ilya M and others. Alzheimer's & Dementia (2023)
	Fine-grained functional parcellation maps of the infant cerebral cortex Wang, Fan and Zhang, Han and Wu, Zhengwang and Hu, Dan and Zhou, Zhen and Girault, Jessica B and Wang, Li and Lin, Weili and Li, Gang. elife (2023)
	Mapping the Evolution of Regional Brain Network Efficiency and Its Association with Infant Cognitive Abilities Jiang, Weixiong and Zhou, Zhen and Li, Guoshi and Yin, Weiyan and Wu, Zhengwang and Wang, Li and Ghanbari, Maryam and Li, Gang and Yap, Pew-Thian and Howell, Brittany R and others. Developmental Cognitive Neuroscience (2023)
	Multiscale functional connectivity patterns of the aging brain learned from harmonized rsfMRI data of the multi-cohort iSTAGING study Zhou, Zhen and Li, Hongming and Srinivasan, Dhivya and Abdulkadir, Ahmed and Nasrallah, Ilya M and Wen, Junhao and Doshi, Jimit and Erus, Guray and Mamourian, Elizabeth and Bryan, Nick R and others. NeuroImage (2023)
	Neural alterations in opioid-exposed infants revealed by edge-centric brain functional networks Jiang, Weixiong and Merhar, Stephanie L and Zeng, Zhuohao and Zhu, Ziliang and Yin, Weiyan and Zhou, Zhen and Wang, Li and He, Lili and Vannest, Jennifer and Lin, Weili. Brain Communications (2022)
	Identification of potentially functional circRNAs and prediction of circRNA-miRNA-mRNA regulatory network in periodontitis bridging the gap between bioinformatics and clinical needs Yu, Weijun and Gu, Qisheng and Wu, Di and Zhang, Weiqi and Li, Gang and Lin, Lu and Lowe, Jared M and Hu, Shucheng and Li, Tia Wenjun and Zhou, Zhen and others. Journal of Periodontal Research (2022)
	Divergent and convergent imaging markers between bipolar and unipolar depression based on machine learning Zhang, Huifeng* and Zhou, Zhen* and Ding, Lei and Wu, Chuangxin and Qiu, Meihui and Huang, Yueqi and Jin, Feng and Shen, Ting and Yang, Yao and Hsu, Li-Ming and others. IEEE Journal of Biomedical and Health Informatics (2022)
	Harmonization of multi-site functional connectivity measures in tangent space improves brain age prediction Zhou, Zhen and Srinivasan, Dhivya and Li, Hongming and Abdulkadir, Ahmed and Shou, Haochang and Davatzikos, Christos and Fan, Yong and ISTAGING Consortium and others. SPIE in Medical Imaging (2022)
	Existence of functional connectome fingerprint during infancy and its stability over months Hu, Dan and Wang, Fan and Zhang, Han and Wu, Zhengwang and Zhou, Zhen and Li, Guoshi and Wang, Li and Lin, Weili and Li, Gang and UNC/UMN Baby Connectome Project Consortium and others. Journal of Neuroscience (2022)
	Cerebral perfusion mediated by thalamo-cortical functional connectivity in non-dominant thalamus affects naming ability in aphasia Zhang, Jie and Zhou, Zhen and Li, Lingling and Ye, Jing and Shang, Desheng and Zhong, Shuchang and Yao, Bo and Xu, Cong and Yu, Yamei and He, Fangping and others. Human Brain Mapping (2022)
	White matter connectometry in patients with disorders of consciousness revealed by 7-Tesla magnetic resonance imaging Tan, Xufei and Zhou, Zhen and Gao, Jian and Yu, Yamei and Wei, Ruili and Luo, Benyan and Zhang, Xiaotong. Brain Imaging and Behavior (2022)
	Altered connectedness of the brain chronnectome during the progression to Alzheimer‘s disease Ghanbari, Maryam and Zhou, Zhen and Hsu, Li-Ming and Han, Ying and Sun, Yu and Yap, Pew-Thian and Zhang, Han and Shen, Dinggang. Neuroinformatics (2022)
	Longitudinal Parcellation of the Infant Cortex Using Multi-modal Connectome Harmonics Taylor, Hoyt Patrick and Ahmad, Sahar and Wu, Ye and Huynh, Khoi Minh and Zhou, Zhen and Wu, Zhengwang and Lin, Weili and Wang, Li and Li, Gang and Zhang, Han and others. Computational Diffusion MRI (2021)
	Effects of prenatal opioid exposure on functional networks in infancy Merhar, Stephanie L and Jiang, Weixiong and Parikh, Nehal A and Yin, Weiyan and Zhou, Zhen and Tkach, Jean A and Wang, Li and Kline-Fath, Beth M and He, Lili and Braimah, Adebayo and others. Developmental Cognitive Neuroscience (2021)
	Classification of type 2 diabetes mellitus with or without cognitive impairment from healthy controls using high-order functional connectivity Chen, Yuna* and Zhou, Zhen* and Liang, Yi and Tan, Xin and Li, Yifan and Qin, Chunhong and Feng, Yue and Ma, Xiaomeng and Mo, Zhanhao and Xia, Jing and others. Human Brain Mapping (2021)
	A new metric for characterizing dynamic redundancy of dense brain chronnectome and its application to early detection of Alzheimer's disease Ghanbari, Maryam and Hsu, Li-Ming and Zhou, Zhen and Ghanbari, Amir and Mo, Zhanhao and Yap, Pew-Thian and Zhang, Han and Shen, Dinggang. MICCAI (2020)
	A computational framework for dissociating development-related from individually variable flexibility in regional modularity assignment in early infancy Soussia, Mayssa and Wen, Xuyun and Zhou, Zhen and Jin, Bing and Kam, Tae-Eui and Hsu, Li-Ming and Wu, Zhengwang and Li, Gang and Wang, Li and Rekik, Islem and others. MICCAI (2020)
	A toolbox for brain network construction and classification (BrainNetClass) Zhou, Zhen and Chen, Xiaobo and Zhang, Yu and Hu, Dan and Qiao, Lishan and Yu, Renping and Yap, Pew-Thian and Pan, Gang and Zhang, Han and Shen, Dinggang. Human brain mapping (2020)
	A deep learning framework for noise component detection from resting-state functional MRI Kam, Tae-Eui and Wen, Xuyun and Jin, Bing and Jiao, Zhicheng and Hsu, Li-Ming and Zhou, Zhen and Liu, Yujie and Yamashita, Koji and Hung, Sheng-Che and Lin, Weili and others. MICCAI (2019)
	Multi-layer temporal network analysis reveals increasing temporal reachability and spreadability in the first two years of life Zhou, Zhen and Zhang, Han and Hsu, Li-Ming and Lin, Weili and Pan, Gang and Shen, Dinggang and UNC/UMN Baby Connectome Project Consortium. MICCAI (2019)
	Structural connectome alterations in patients with disorders of consciousness revealed by 7-tesla magnetic resonance imaging Tan, Xufei and Zhou, Zhen and Gao, Jian and Meng, Fanxia and Yu, Yamei and Zhang, Jie and He, Fangping and Wei, Ruili and Wang, Junyang and Peng, Guoping and others. NeuroImage: Clinical (2019)
	Functional connectivity of anterior insula predicts recovery of patients with disorders of consciousness Zhang, Li and Luo, Lunjie and Zhou, Zhen and Xu, Kaibin and Zhang, Lijuan and Liu, Xiaoyan and Tan, Xufei and Zhang, Jie and Ye, Xiangming and Gao, Jian and others. Frontiers in neurology (2018)
	Behavioral and resting state functional connectivity effects of high frequency rTMS on disorders of consciousness: a sham-controlled study Liu, Xiaoyan and Meng, Fanxia and Gao, Jian and Zhang, Li and Zhou, Zhen and Pan, Gang and Luo, Benyan. Frontiers in neurology (2018)
	Multifunctional roles of the ventral stream in language models: advanced segmental quantification in post-stroke aphasic patients Zhang, Jie and Wei, Xuehu and Xie, Sangma and Zhou, Zhen and Shang, Desheng and Ji, Renjie and Yu, Yamei and He, Fangping and Du, Yue and Ye, Xiangming and others. Frontiers in neurology (2018)
	PAIR comparison between two within-group conditions of resting-state fMRI improves classification accuracy Zhou, Zhen and Wang, Jian-Bao and Zang, Yu-Feng and Pan, Gang. Frontiers in Neuroscience (2018)
	Spontaneous recovery from unresponsive wakefulness syndrome to a minimally conscious state: early structural changes revealed by 7-T magnetic resonance imaging Tan, Xufei and Gao, Jian and Zhou, Zhen and Wei, Ruili and Gong, Ting and Wu, Yuqin and Liu, Kehong and He, Fangping and Wang, Junyang and Li, Jingqi and others. Frontiers in Neurology (2018)
	Association of medial prefrontal cortex connectivity with consciousness level and its outcome in patients with acquired brain injury Liu, Xiaoyan and Li, Jingqi and Gao, Jian and Zhou, Zhen and Meng, Fanxia and Pan, Gang and Luo, Benyan. Journal of Clinical Neuroscience (2017)